Yes! If you have an active clubpenguin.com account and you log in from Club Penguin's Puffle Launch for iPad, iPhone, iPod touch and Android, the coins you earn will be transferred to your clubpenguin.com account with an internet connection.

To transfer coins to your clubpenguin.com account go the start screen (main menu) and click on the penguin icon in the lower right corner. Enter your penguin name and password.